001/**
002 * Copyright (C) 2010-2015 The Roslin Institute <contact andy.law@roslin.ed.ac.uk>
003 *
004 * This file is part of JEnsembl: a Java API to Ensembl data sources developed by the
005 * Bioinformatics Group at The Roslin Institute, The Royal (Dick) School of
006 * Veterinary Studies, University of Edinburgh.
007 *
008 * Project hosted at: http://jensembl.sourceforge.net
009 *
010 * This is free software: you can redistribute it and/or modify
011 * it under the terms of the GNU General Public License (version 3) as published by
012 * the Free Software Foundation.
013 *
014 * This software is distributed in the hope that it will be useful,
015 * but WITHOUT ANY WARRANTY; without even the implied warranty of
016 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
017 * GNU General Public License for more details.
018 *
019 * You should have received a copy of the GNU General Public License
020 * in this software distribution. If not, see: http://opensource.org/licenses/gpl-3.0.html
021 */
022package uk.ac.roslin.ensembl.model.variation;
023
024import java.util.List;
025import uk.ac.roslin.ensembl.model.XRef;
026import uk.ac.roslin.ensembl.model.core.Feature;
027
028/**
029 *
030 * @author tpaterso
031 */
032public interface Variation extends Feature {
033    
034    public String getName();
035    public void setName(String name);
036    public XRef getXRef();
037    public Boolean isSomatic();
038    public Boolean isFlipped();
039    public String getAncestralAllele();
040    public String getSynonym();
041    public List<String> getAllSynonyms();
042    public void setSynonym(String altname);
043    public int getOccurrences();
044   
045    
046}