001/**
002 * Copyright (C) 2010-2015 The Roslin Institute <contact andy.law@roslin.ed.ac.uk>
003 *
004 * This file is part of JEnsembl: a Java API to Ensembl data sources developed by the
005 * Bioinformatics Group at The Roslin Institute, The Royal (Dick) School of
006 * Veterinary Studies, University of Edinburgh.
007 *
008 * Project hosted at: http://jensembl.sourceforge.net
009 *
010 * This is free software: you can redistribute it and/or modify
011 * it under the terms of the GNU General Public License (version 3) as published by
012 * the Free Software Foundation.
013 *
014 * This software is distributed in the hope that it will be useful,
015 * but WITHOUT ANY WARRANTY; without even the implied warranty of
016 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
017 * GNU General Public License for more details.
018 *
019 * You should have received a copy of the GNU General Public License
020 * in this software distribution. If not, see: http://opensource.org/licenses/gpl-3.0.html
021 */
022package uk.ac.roslin.ensembl.model.core;
023
024import java.util.Collection;
025import java.util.HashMap;
026import java.util.TreeSet;
027import uk.ac.roslin.ensembl.model.database.CollectionDatabase;
028import uk.ac.roslin.ensembl.model.database.DatabaseType;
029
030/**
031 *
032 * @author paterson
033 */
034public interface CollectionOfSpecies {
035
036    public void setProperty(String id, HashMap row) ;
037
038    public String getDBVersion() ;
039
040    public String getCollectionName() ;
041
042    public CollectionDatabase getCoreDatabase();
043
044    public String getSchemaVersion() ;
045
046    public TreeSet<? extends CollectionDatabase> getDatabases() ;
047
048    public void addDatabases(TreeSet<? extends CollectionDatabase> databases) ;
049
050    public TreeSet<? extends CollectionSpecies> getSpecies() ;
051
052    public void addSpecies(Collection<? extends CollectionSpecies> spp);
053
054    public void addSpecies(CollectionSpecies sp) ;
055
056    public TreeSet<? extends CollectionDatabase> getDatabasesByType(DatabaseType type) ;
057
058}