001/**
002 * Copyright (C) 2010-2015 The Roslin Institute <contact andy.law@roslin.ed.ac.uk>
003 *
004 * This file is part of JEnsembl: a Java API to Ensembl data sources developed by the
005 * Bioinformatics Group at The Roslin Institute, The Royal (Dick) School of
006 * Veterinary Studies, University of Edinburgh.
007 *
008 * Project hosted at: http://jensembl.sourceforge.net
009 *
010 * This is free software: you can redistribute it and/or modify
011 * it under the terms of the GNU General Public License (version 3) as published by
012 * the Free Software Foundation.
013 *
014 * This software is distributed in the hope that it will be useful,
015 * but WITHOUT ANY WARRANTY; without even the implied warranty of
016 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
017 * GNU General Public License for more details.
018 *
019 * You should have received a copy of the GNU General Public License
020 * in this software distribution. If not, see: http://opensource.org/licenses/gpl-3.0.html
021 */
022package uk.ac.roslin.ensembl.dao;
023
024import java.util.List;
025import java.util.TreeSet;
026import uk.ac.roslin.ensembl.dao.coreaccess.ReInitializationDAO;
027import uk.ac.roslin.ensembl.exception.DAOException;
028import uk.ac.roslin.ensembl.model.IdentifiableObject;
029import uk.ac.roslin.ensembl.model.XRef;
030import uk.ac.roslin.ensembl.model.XRefed;
031
032
033public interface XRefDAO extends ReInitializationDAO {
034
035    public List<? extends XRef> getAllXRefs(IdentifiableObject feature) throws DAOException;
036    public TreeSet<String> getSynonyms(XRef xref) throws DAOException;
037    public TreeSet<String> getAllSynonyms(XRefed object) throws DAOException;
038    
039}